Batch Bioinformatics

Big data bioinformatics pipelines without the hassle.

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Solutions

Explore Manifold's core solutions

Cancer Observational Study

Streamline legacy systems and manual processes with a single study and data management platform.

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Cancer Center Biobank

Reduce turnaround time and increase productivity by connecting biospecimen data and clinical data in a single data management platform.

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Multi-Engine Flexibility

Run complex genomic workflows on your preferred engine without platform switching, enabling seamless transitions between WDL and Nextflow while maintaining consistent interfaces and outputs.

Enterprise-Grade Scalability

Process petabytes of genomic data reliably with detailed logging, automatic fault recovery, intelligent resource allocation, and sophisticated call caching that eliminates redundant computations.

Low-Code Pipelines

Simplify genomics research with an intuitive interface for configuring community pipelines without programming expertise. Easily adapt published workflows to your specific research needs.

Solutions

Fit-for-purpose solutions for clinical research leaders in cancer and rare disease.

Cancer Observational Study

Streamline legacy systems and manual processes with a single study and data management platform.

Learn more

Cancer Center Biobank

Reduce and turnaround time and increase productivity by connecting biospecimen data and clinical data in a single data management platform.

Learn more

Cancer Center Registry

Unify clinical and multimodal data on a modern platform to enable automated data preparation into a research-ready patient model.

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Rare Disease Registry

Answer research questions about diagnoses, treatments, and outcomes quickly and easily.

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Trusted by leading institutions

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Accelerate Your Research with Batch Bioinformatics

Multi-Engine Support

Run WDL or Nextflow workflows on AWS HealthOmics or Cromwell without switching platforms or learning new tools.

Horizontal Scalability

Scale across thousands of compute nodes to handle petabytes of genomic data with intelligent resource allocation and scatter-gather operations.

Real-Time Monitoring

Debug at pipeline, task, and individual run levels with centralized logging and live progress tracking for transparent troubleshooting.

Call Caching

Accelerate analyses and reduce costs by leveraging advanced call caching capabilities, which automatically detect and reuse results from previously completed workflow steps—eliminating redundant computations and ensuring efficient, reproducible execution.

Automatic Recovery

Ensure robust fault tolerance with built-in automatic recovery features, which detect failed tasks, retry them intelligently, and resume workflows from the point of interruption—minimizing data loss and manual intervention.

Low-Code Launch

Deploy public workflows with minimal setup—just specify a GitHub repository and Docker image. Our intuitive interface enables point-and-click workflow creation and analysis without coding. Soon, integrated AI agents will guide setup, optimize parameters, and automate routine tasks, making advanced bioinformatics accessible to all.

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Built for the AI Era of Science

"At Manifold, AI is the bridge between the language of science and the reality of data, removing barriers so ideas can move at the speed of discovery.”

Sourav Dey, PhD

CPO + Co-founder

Ready to streamline your bioinformatics pipelines?

Batch Bioinformatics is just one part of the Manifold platform—designed to accelerate every step of your research journey. From AI-assisted data ingestion to to AI-agents for scientific analysis, Manifold helps teams go from raw data to actionable insight without friction.

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